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B
A. Bessani, Brandt, J., Bux, M., Cogo, V., Dimitrova, L., Dowling, J., Gholami, A., Hakimzadeh, K., Hummel, M., Ismail, M., Laure, E., Leser, U., Litton, J. - E., Martinez, R., Niazi, S., Reichel, J., and Zimmermann, K., “BiobankCloud: A Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets”, in Biomedical Data Management and Graph Online Querying: VLDB 2015 Workshops, Big-O(Q) and DMAH, Waikoloa, HI, USA, August 31 – September 4, 2015, Revised Selected Papers, F. Wang, Luo, G., Weng, C., Khan, A., Mitra, P., and Yu, C., Eds. Cham: Springer International Publishing, 2016, pp. 89–105.
B. Parvin, Yang, Q., Fontenay, G., and Barcellos-Hoff, M. H., “BioSig: an imaging bioinformatics system for phenotypic analysis.”, IEEE transactions on systems, man, and cybernetics. Part B, Cybernetics : a publication of the IEEE Systems, Man, and Cybernetics Society, vol. 33, no. 5, pp. 814-24, 2003.
C
H. Ming Seah, Burney, M., Phan, M., Shell, D., Wu, J., Zhou, K., Brooks, O., Coulton, B., Maingard, J., Tang, J., Yazdabadi, G., Tahayori, B., Barras, C., Kok, H. Kuan, Chandra, R., Thijs, V., Brooks, D. Mark, and Asadi, H., “CODE STROKE ALERT-Concept and Development of a Novel Open-Source Platform to Streamline Acute Stroke Management.”, Front Neurol, vol. 10, p. 725, 2019.
N. Young, Chau, C., and Adziovsky, J., “Commercial Open Source RIS/PACS: The ClearCanvas Experience”, in Proceedings of the 1st International Workshop on Open Source in European Health Care: The Time is Ripe (BIOSTEC 2009), 2009.
D
A. Raut, Yarbrough, C., Singh, V., Gauchan, B., Citrin, D., Verma, V., Hawley, J., Schwarz, D., Bangura, A. Harsha, Shrestha, B., Schwarz, R., Adhikari, M., and Maru, D., “Design and implementation of an affordable, public sector electronic medical record in rural Nepal.”, J Innov Health Inform, vol. 24, no. 2, p. 862, 2017.
S. Shiferaw, Workneh, A., Yirgu, R., Dinant, G. - J., and Spigt, M., “Designing mHealth for maternity services in primary health facilities in a low-income setting - lessons from a partially successful implementation.”, BMC Med Inform Decis Mak, vol. 18, no. 1, p. 96, 2018.
A. Enquobahrie, Gobbi, D., Turek, M., Cheng, P., Yaniv, Z., Lindseth, F., and Cleary, K., “Designing Tracking Software for Image-Guided Surgery Applications: IGSTK Experience.”, Int J Comput Assist Radiol Surg, vol. 3, no. 5, pp. 395-403, 2008.
E
Z. Shalchi, Okada, M., Bruynseels, A., Palethorpe, D., Yusuf, A., Hussain, R., Herrspiegel, C., Scazzarriello, A., Habib, A., Amin, R., and Rajendram, R., “Effect of glycosylated hemoglobin on response to ranibizumab therapy in diabetic macular edema: real-world outcomes in 312 patients.”, Can J Ophthalmol, vol. 53, no. 4, pp. 415-419, 2018.
W. - J. Lee, Yang, C. - Y., Liu, K. - L., Liu, H. - M., Ching, Y. - T., and Chen, S. - J., “Establishing a Web-based DICOM teaching file authoring tool using open-source public software.”, Journal of digital imaging : the official journal of the Society for Computer Applications in Radiology, vol. 18, no. 3, pp. 169-75, 2005.
K. Atalag, Yang, H. Yul, Tempero, E., and Warren, J. R., “Evaluation of software maintain ability with open EHR - a comparison of architectures.”, Int J Med Inform, vol. 83, no. 11, pp. 849-59, 2014.
F. J. Parada, Wyatte, D., Yu, C., Akavipat, R., Emerick, B., and Busey, T., “ExpertEyes: Open-source, high-definition eyetracking.”, Behav Res Methods, 2014.
F
S. Yamamoto, “Fundamental of medical image processing with personal computer system--Image processing of computed tomography with imageJ”, Nippon Hoshasen Gijutsu Gakkai zasshi, vol. 65, no. 12, pp. 1680-2, 2009.
H
M. Baskaya, Yuksel, M., Erturkmen, G. Banu Lalec, Cunningham, M., and Cunningham, P., “Health4Afrika - Implementing HL7 FHIR Based Interoperability.”, Stud Health Technol Inform, vol. 264, pp. 20-24, 2019.
W. Kuchinke, Ohmann, C., Yang, Q., Salas, N., Lauritsen, J., Gueyffier, F., Leizorovicz, A., Schade-Brittinger, C., Wittenberg, M., Voko, Z., Gaynor, S., Cooney, M., Doran, P., Maggioni, A., Lorimer, A., Torres, F., McPherson, G., Charvill, J., Hellstrom, M., and Lejeune, S., “Heterogeneity prevails: the state of clinical trial data management in Europe - results of a survey of ECRIN centres.”, Trials, vol. 11, no. 1, p. 79, 2010.
E. C. McKiernan, Bourne, P. E., C Brown, T., Buck, S., Kenall, A., Lin, J., McDougall, D., Nosek, B. A., Ram, K., Soderberg, C. K., Spies, J. R., Thaney, K., Updegrove, A., Woo, K. H., and Yarkoni, T., “How open science helps researchers succeed.”, Elife, vol. 5, 2016.
I
A. Brusan, F Durmaz, A., Yaman, A., and Öztürk, C., “iBEX: Modular Open-Source Software for Digital Radiography.”, J Digit Imaging, vol. 33, no. 3, pp. 708-721, 2020.
A. Enquobahrie, Cheng, P., Gary, K., Ibanez, L., Gobbi, D., Lindseth, F., Yaniv, Z., Aylward, S., Jomier, J., and Cleary, K., “The image-guided surgery toolkit IGSTK: an open source C++ software toolkit.”, J Digit Imaging, vol. 20 Suppl 1, pp. 21-33, 2007.
M. Klompas, McVetta, J., Lazarus, R., Eggleston, E., Haney, G., Kruskal, B. A., Yih, K. W., Daly, P., Oppedisano, P., Beagan, B., Lee, M., Kirby, C., Heisey-Grove, D., DeMaria, A., and Platt, R., “Integrating clinical practice and public health surveillance using electronic medical record systems.”, Am J Prev Med, vol. 42, no. 6 Suppl 2, pp. S154-62, 2012.
J. Huang, Ling, A., Summers, R. M., and Yao, J., “Integration of PACS and CAD systems using DICOMDIR and open-source tools”, p. 86740V-86740V-6, 2013.
I. Letunic, Yamada, T., Kanehisa, M., and Bork, P., “iPath: interactive exploration of biochemical pathways and networks.”, Trends in biochemical sciences, vol. 33, no. 3, pp. 101-3, 2008.
M
A. Seitel, Yung, K., Mersmann, S., Kilgus, T., Groch, A., Dos Santos, T. R., Franz, A. M., Nolden, M., Meinzer, H. - P., and Maier-Hein, L., “MITK-ToF-Range data within MITK.”, International journal of computer assisted radiology and surgery, 2011.
G. Biemba, Chiluba, B., Yeboah-Antwi, K., Silavwe, V., Lunze, K., Mwale, R. K., Russpatrick, S., and Hamer, D. H., “A Mobile-Based Community Health Management Information System for Community Health Workers and Their Supervisors in 2 Districts of Zambia.”, Glob Health Sci Pract, vol. 5, no. 3, pp. 486-494, 2017.
N
K. G. Shah, Slough, T. Lyn, Yeh, P. Teresa, Gombwa, S., Kiromera, A., Z Oden, M., and Richards-Kortum, R. R., “Novel open-source electronic medical records system for palliative care in low-resource settings.”, BMC Palliat Care, vol. 12, no. 1, p. 31, 2013.
O
A. E. Williamson, Ylioja, P. M., Robertson, M. N., Antonova-Koch, Y., Avery, V., Baell, J. B., Batchu, H., Batra, S., Burrows, J. N., Bhattacharyya, S., Calderon, F., Charman, S. A., Clark, J., Crespo, B., Dean, M., Debbert, S. L., Delves, M., Dennis, A. S. M., Deroose, F., Duffy, S., Fletcher, S., Giaever, G., Hallyburton, I., Gamo, F. - J., Gebbia, M., R. Guy, K., Hungerford, Z., Kirk, K., Lafuente-Monasterio, M. J., Lee, A., Meister, S., Nislow, C., Overington, J. P., Papadatos, G., Patiny, L., Pham, J., Ralph, S. A., Ruecker, A., Ryan, E., Southan, C., Srivastava, K., Swain, C., Tarnowski, M. J., Thomson, P., Turner, P., Wallace, I. M., Wells, T. N. C., White, K., White, L., Willis, P., Winzeler, E. A., Wittlin, S., and Todd, M. H., “Open {Source} {Drug} {Discovery}: {Highly} {Potent} {Antimalarial} {Compounds} {Derived} from the {Tres} {Cantos} {Arylpyrroles}”, ACS central science, vol. 2, pp. 687–701, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.

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