Bibliography

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Book Chapter
G. Faustini and Inchingolo, P., O3-RWS: a Java-based, IHE-compliant open-source radiology workstation, in 11th Mediterranean Conference on Medical and Biomedical Engineering and Computing 2007, vol. 16, R. Magjarevic, Jarm, T., Kramar, P., and Zupanic, A., Eds. Springer Berlin Heidelberg, 2007, pp. 727-731.
Conference Paper
J. Vejvalka, Lesný, P., Holeček, T., Slabý, K., Jarolímková, A., and Bouzková, H., MediGrid – Facilitating Semantic-Based processing of Biomedical Data and Knowledge, in Proceedings of the 1st International Workshop on Open Source in European Health Care: The Time is Ripe (BIOSTEC 2009), 2009.
Journal Article
B. E. Jackson, Evangelista, D. J., Ray, D. D., and Hedrick, T. L., 3D for the people: multi-camera motion capture in the field with consumer-grade cameras and open source software., Biol Open, 2016.
G. Kim, Jung, H. - J., Lee, H. - J., Lee, J. - S., Koo, S., and Chang, S. - H., Accuracy and Reliability of Length Measurements on Three-Dimensional Computed Tomography Using Open-Source OsiriX Software., Journal of digital imaging : the official journal of the Society for Computer Applications in Radiology, 2012.
S. M. Smith, Jenkinson, M., Woolrich, M. W., Beckmann, C. F., Behrens, T. E. J., Johansen-Berg, H., Bannister, P. R., De Luca, M., Drobnjak, I., Flitney, D. E., Niazy, R. K., Saunders, J., Vickers, J., Zhang, Y., De Stefano, N., Brady, M. J., and Matthews, P. M., Advances in functional and structural MR image analysis and implementation as FSL., NeuroImage, vol. 23 Suppl 1, pp. S208-19, 2004.
S. M. Smith, Jenkinson, M., Woolrich, M. W., Beckmann, C. F., Behrens, T. E. J., Johansen-Berg, H., Bannister, P. R., De Luca, M., Drobnjak, I., Flitney, D. E., Niazy, R. K., Saunders, J., Vickers, J., Zhang, Y., De Stefano, N., Brady, M. J., and Matthews, P. M., Advances in functional and structural MR image analysis and implementation as FSL., NeuroImage, vol. 23 Suppl 1, pp. S208-19, 2004.
D. Valle Lova Juan, Grageda, E., and Crespo, S. Gómez, Anterior loop of the inferior alveolar nerve: Averages and prevalence based on CT scans., J Prosthet Dent, 2015.
M. W. Woolrich, Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., Beckmann, C., Jenkinson, M., and Smith, S. M., Bayesian analysis of neuroimaging data in FSL., NeuroImage, vol. 45, no. 1 Suppl, pp. S173-86, 2009.
M. W. Woolrich, Jbabdi, S., Patenaude, B., Chappell, M., Makni, S., Behrens, T., Beckmann, C., Jenkinson, M., and Smith, S. M., Bayesian analysis of neuroimaging data in FSL., NeuroImage, vol. 45, no. 1 Suppl, pp. S173-86, 2009.
L. D. McIntosh, Sharma, M. K., Mulvihill, D., Gupta, S., Juehne, A., George, B., Khot, S. B., Kaushal, A., Watson, M. A., and Nagarajan, R., caTissue Suite to OpenSpecimen: developing an extensible, open source, web-based biobanking management system, Journal of biomedical informatics, vol. 57, pp. 456 - 464, 2015.
B. W. Mamlin, Biondich, P. G., Wolfe, B. A., Fraser, H., Jazayeri, D., Allen, C., Miranda, J., and Tierney, W. M., Cooking up an open source EMR for developing countries: OpenMRS - a recipe for successful collaboration., AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium, pp. 529-33, 2006.
J. G. Klann, Joss, M. A. H., Embree, K., and Murphy, S. N., Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model., PLoS One, vol. 14, no. 2, p. e0212463, 2019.
B. Zhang, Tian, Y., Jin, L., Li, H., Shih, I. - M., Madhavan, S., Clarke, R., Hoffman, E. P., Xuan, J., Hilakivi-Clarke, L., and Wang, Y., DDN: a caBIG® analytical tool for differential network analysis., Bioinformatics, vol. 27, no. 7, pp. 1036-8, 2011.
D. Jazayeri, Oza, S., Ramos, G., Fraser, H., Teich, J. M., Kanter, A. S., and Ball, E., Design and development of an EMR for Ebola Treatment Centers in Sierra Leone using OpenMRS., Stud Health Technol Inform, vol. 216, p. 916, 2015.
S. Oza, Jazayeri, D., Teich, J. M., Ball, E., Nankubuge, P. Alexandra, Rwebembera, J., Wing, K., Sesay, A. Amara, Kanter, A. S., Ramos, G. D., Walton, D., Cummings, R., Checchi, F., and Fraser, H. S., Development and Deployment of the OpenMRS-Ebola Electronic Health Record System for an Ebola Treatment Center in Sierra Leone., J Med Internet Res, vol. 19, no. 8, p. e294, 2017.
L. Zhou, Parmanto, B., and Joshi, J., Development and Evaluation of a New Security and Privacy Track in a Health Informatics Graduate Program: Multidisciplinary Collaboration in Education., JMIR Med Educ, vol. 4, no. 2, p. e19, 2018.
H. S. F. Fraser, Habib, A., Goodrich, M., Thomas, D., Blaya, J. A., Fils-Aime, J. Reginald, Jazayeri, D., Seaton, M., Khan, A. J., Choi, S. S., Kerrison, F., Falzon, D., and Becerra, M. C., E-health systems for management of MDR-TB in resource-poor environments: a decade of experience and recommendations for future work., Stud Health Technol Inform, vol. 192, pp. 627-31, 2013.
D. - A. Jurcău and Stoicu-Tivadar, V., Evaluating Open-Source Full-Text Search Engines for Matching ICD-10 Codes., Stud Health Technol Inform, vol. 226, pp. 127-30, 2016.
E. Waters, Rafter, J., Douglas, G. P., Bwanali, M., Jazayeri, D., and Fraser, H. S. F., Experience implementing a point-of-care electronic medical record system for primary care in Malawi., Stud Health Technol Inform, vol. 160, no. Pt 1, pp. 96-100, 2010.
R. Jolly, Arjunan, M., Theodorou, M., and Dahlmann-Noor, A. H., Eye injuries in children - incidence and outcomes: An observational study at a dedicated children's eye casualty., Eur J Ophthalmol, vol. 29, no. 5, pp. 499-503, 2019.
K. Rochel de Jr and Coeli, C. Medina, Going open source: some lessons learned from the development of OpenRecLink., Cad Saude Publica, vol. 31, no. 2, pp. 257-63, 2015.
S. Wang, Pandis, I., Wu, C., He, S., Johnson, D., Emam, I., Guitton, F., and Guo, Y., High dimensional biological data retrieval optimization with NoSQL technology., BMC Genomics, vol. 15 Suppl 8, p. S3, 2014.
A. Enquobahrie, Cheng, P., Gary, K., Ibanez, L., Gobbi, D., Lindseth, F., Yaniv, Z., Aylward, S., Jomier, J., and Cleary, K., The image-guided surgery toolkit IGSTK: an open source C++ software toolkit., J Digit Imaging, vol. 20 Suppl 1, pp. 21-33, 2007.
V. J. Tuominen, Ruotoistenmaki, S., Viitanen, A., Jumppanen, M., and Isola, J., ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67., Breast cancer research : BCR, vol. 12, no. 4, p. R56, 2010.

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