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2019
J. G. Klann, Joss, M. A. H., Embree, K., and Murphy, S. N., “Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model.”, PLoS One, vol. 14, no. 2, p. e0212463, 2019.
R. Jolly, Arjunan, M., Theodorou, M., and Dahlmann-Noor, A. H., “Eye injuries in children - incidence and outcomes: An observational study at a dedicated children's eye casualty.”, Eur J Ophthalmol, vol. 29, no. 5, pp. 499-503, 2019.
B. S. Glicksberg, Oskotsky, B., Thangaraj, P. M., Giangreco, N., Badgeley, M. A., Johnson, K. W., Datta, D., Rudrapatna, V., Rappoport, N., Shervey, M. M., Miotto, R., Goldstein, T. C., Rutenberg, E., Frazier, R., Lee, N., Israni, S., Larsen, R., Percha, B., Li, L., Dudley, J. T., Tatonetti, N. P., and Butte, A. J., “PatientExploreR: an extensible application for dynamic visualization of patient clinical history from Electronic Health Records in the OMOP Common Data Model Title.”, Bioinformatics, 2019.
2018
L. Zhou, Parmanto, B., and Joshi, J., “Development and Evaluation of a New Security and Privacy Track in a Health Informatics Graduate Program: Multidisciplinary Collaboration in Education.”, JMIR Med Educ, vol. 4, no. 2, p. e19, 2018.
R. Vandaele, Aceto, J., Muller, M., Péronnet, F., Debat, V., Wang, C. - W., Huang, C. - T., Jodogne, S., Martinive, P., Geurts, P., and Marée, R., “Landmark detection in 2D bioimages for geometric morphometrics: a multi-resolution tree-based approach.”, Sci Rep, vol. 8, no. 1, p. 538, 2018.
A. Burgdorf, Güthe, I., Jovanović, M., Kutafina, E., Kohlschein, C., Bitsch, J. Ágila, and Jonas, S. M., “The mobile sleep lab app: {An} open-source framework for mobile sleep assessment based on consumer-grade wearable devices”, Computers in Biology and Medicine, vol. 103, pp. 8–16, 2018.
A. Burgdorf, Güthe, I., Jovanović, M., Kutafina, E., Kohlschein, C., Bitsch, J. Ágila, and Jonas, S. M., “The mobile sleep lab app: {An} open-source framework for mobile sleep assessment based on consumer-grade wearable devices”, Computers in Biology and Medicine, vol. 103, pp. 8–16, 2018.
S. Jodogne, “The Orthanc Ecosystem for Medical Imaging.”, J Digit Imaging, vol. 31, no. 3, pp. 341-352, 2018.
2017
S. Oza, Jazayeri, D., Teich, J. M., Ball, E., Nankubuge, P. Alexandra, Rwebembera, J., Wing, K., Sesay, A. Amara, Kanter, A. S., Ramos, G. D., Walton, D., Cummings, R., Checchi, F., and Fraser, H. S., “Development and Deployment of the OpenMRS-Ebola Electronic Health Record System for an Ebola Treatment Center in Sierra Leone.”, J Med Internet Res, vol. 19, no. 8, p. e294, 2017.
P. Bankhead, Loughrey, M. B., Fernández, J. A., Dombrowski, Y., McArt, D. G., Dunne, P. D., McQuaid, S., Gray, R. T., Murray, L. J., Coleman, H. G., James, J. A., Salto-Tellez, M., and Hamilton, P. W., “QuPath: Open source software for digital pathology image analysis.”, Sci Rep, vol. 7, no. 1, p. 16878, 2017.
2016
B. E. Jackson, Evangelista, D. J., Ray, D. D., and Hedrick, T. L., “3D for the people: multi-camera motion capture in the field with consumer-grade cameras and open source software.”, Biol Open, 2016.
D. - A. Jurcău and Stoicu-Tivadar, V., “Evaluating Open-Source Full-Text Search Engines for Matching ICD-10 Codes.”, Stud Health Technol Inform, vol. 226, pp. 127-30, 2016.
T. Tuti, Bitok, M., Malla, L., Paton, C., Muinga, N., Gathara, D., Gachau, S., Mbevi, G., Nyachiro, W., Ogero, M., Julius, T., Irimu, G., and English, M., “Improving documentation of clinical care within a clinical information network: an essential initial step in efforts to understand and improve care in Kenyan hospitals.”, BMJ Glob Health, vol. 1, no. 1, p. e000028, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
I. K. Moutsatsos, Hossain, I., Agarinis, C., Harbinski, F., Abraham, Y., Dobler, L., Zhang, X., Wilson, C. J., Jenkins, J. L., Holway, N., Tallarico, J., and Parker, C. N., “Jenkins-{CI}, an {Open}-{Source} {Continuous} {Integration} {System}, as a {Scientific} {Data} and {Image}-{Processing} {Platform}”, Journal of Biomolecular Screening, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.
K. M. Landgraf, Kakkar, R., Meigs, M., Jankauskas, P. T., Phan, T. Thu Huong, Nguyen, V. Nga, Nguyen, D. Thai, Duong, T. Tung, Nguyen, T. Hoa, and Bond, K. B., “Open-source LIMS in Vietnam: The path toward sustainability and host country ownership.”, Int J Med Inform, vol. 93, pp. 92-102, 2016.
M. Dehghani, Johnson, K. M., Garten, J., Boghrati, R., Hoover, J., Balasubramanian, V., Singh, A., Shankar, Y., Pulickal, L., Rajkumar, A., and Parmar, N. Jitendra, “TACIT: An open-source text analysis, crawling, and interpretation tool.”, Behav Res Methods, 2016.
2015
D. Valle Lova Juan, Grageda, E., and Crespo, S. Gómez, “Anterior loop of the inferior alveolar nerve: Averages and prevalence based on CT scans.”, J Prosthet Dent, 2015.
L. D. McIntosh, Sharma, M. K., Mulvihill, D., Gupta, S., Juehne, A., George, B., Khot, S. B., Kaushal, A., Watson, M. A., and Nagarajan, R., “caTissue Suite to OpenSpecimen: developing an extensible, open source, web-based biobanking management system”, Journal of biomedical informatics, vol. 57, pp. 456 - 464, 2015.
D. Jazayeri, Oza, S., Ramos, G., Fraser, H., Teich, J. M., Kanter, A. S., and Ball, E., “Design and development of an EMR for Ebola Treatment Centers in Sierra Leone using OpenMRS.”, Stud Health Technol Inform, vol. 216, p. 916, 2015.
K. Rochel de Jr and Coeli, C. Medina, “Going open source: some lessons learned from the development of OpenRecLink.”, Cad Saude Publica, vol. 31, no. 2, pp. 257-63, 2015.

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