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QuPath: Open source software for digital pathology image analysis.

Submitted by karopka on Tue, 2021/10/05 - 15:18
TitleQuPath: Open source software for digital pathology image analysis.
Publication TypeJournal Article
Year of Publication2017
AuthorsBankhead, P, Loughrey, MB, Fernández, JA, Dombrowski, Y, McArt, DG, Dunne, PD, McQuaid, S, Gray, RT, Murray, LJ, Coleman, HG, James, JA, Salto-Tellez, M, Hamilton, PW
JournalSci Rep
Volume7
Issue1
Pagination16878
Date Published2017 12 04
ISSN2045-2322
KeywordsAlgorithms, Biomarkers, Tumor, Colonic Neoplasms, Humans, Image Interpretation, Computer-Assisted, Kaplan-Meier Estimate, Programmed Cell Death 1 Ligand 2 Protein, User-Computer Interface
Abstract

QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath's flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.

DOI10.1038/s41598-017-17204-5
Alternate JournalSci Rep
PubMed ID29203879
PubMed Central IDPMC5715110
Grant ListC11512/A20256 / / Cancer Research UK / United Kingdom
C37703/A15333 / / Cancer Research UK / United Kingdom
C50104/A17592 / / Cancer Research UK / United Kingdom
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