rxncon

The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

• Automatic visualiztion with Cytoscape.
• Automatic generation of rule based models for BioNetGen.
• Storage of biological facts that can be used for modelling.