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Niftilib

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Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.

Snofyre

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Snofyre is an open source, service oriented API for creating SNOMED CT enabled applications in Java. It provides a number of SNOMED CT related services out of the box. These services can be used:

  • as a starter for understanding how to add SNOMED CT functionality to an application.
  • to rapidly prototype a SNOMED CT enabled application.

Snofyre API aims to

  • reduce the 'ramp up' time needed to understand
  • and embed SNOMED CT functionality in an application.

Perl HL7 Toolkit

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This project provides a simple but flexible Perl Toolkit for using the HL7 protocol. The toolkit consists of a Perl API, an implementation of a pluggable forking HL7 server, and an HL7 message queue daemon for developing HL7 capable applications in Perl.

FrameWork for Software Production Line (FW4SPL)

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FW4SPL is a component-oriented architecture with the notion of role-based programming. FW4SPL consists of a set of cross-platform C++ libraries. For now, FW4SPL focuses on the problem of medical images processing and visualization.

Ruby HL7

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Ruby HL7 is a simple library for parsing and generating HL7 2.x messages. 3.x support is planned in the future.

Ruby DICOM

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UBY DICOM is a cross-platform library for handling DICOM files and network communication in the Ruby language. DICOM is a standard that is widely used throughout the world for saving and transmitting image data used in medicine. The library supports reading, editing and writing files as well as querying, retrieving and sending files.

BioSig

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BioSig is an open source software library for biomedical signal processing, featuring for example the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Major application areas are: Neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems and sleep research. The aim of the BioSig project is to foster research in biomedical signal processing by providing open source software tools for many different applications.

pydicom

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pydicom is a pure python package for working with DICOM files. It was made for inspecting and modifying DICOM data in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements.

pydicom is not a DICOM server, and is not primarily about viewing images. It is designed to let you manipulate data elements in DICOM files with python code.

ODIN

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"ODIN is a C++ software framework to develop, simulate and run magnetic resonance sequences on different platforms."

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