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The 'epibasix' R Package

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This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity).

Appropriate print and summary statements are also written to facilitate interpretation wherever possible.

This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

The 'epi' R Package

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The Epi package is mainly focused on "classical" chronic disease epidemiology. The package has grown out of the course Statistical Practice in Epidemiology using R.

The 'DiagnosisMed' R Package

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DiagnosisMed is a package to analyze data from diagnostic test accuracy evaluating health conditions. It is being built to be used by health professionals. This package is able to estimate sensitivity and specificity from categorical and continuous test results including some evaluations of indeterminate results, or compare different categorical tests, and estimate reasonble cut-offs of tests and display it in a way commonly used by health professionals. No graphical interface is avalible yet. Partners are most welcome.

Epigrass

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Epigrass is a open-source simulation platform created to study epidemics and their spatial (geographic) dinamics.

Epigrass was developed as a scientific project, by the founders of Metamodellers at the Oswaldo Cruz Foundation. Currently, Metamodellers is the main maintainer of the code, ensuring its continuous improvement while remaining a completely free tool.

MEDILIG - Medical Life Guard

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MEDILIG – Medical Life Guard: An EHR, EMR cross-platform software for the design, implementation and use of autonomous, open, database models for multilingual medical knowledge management systems from primary care to continuing care.

VTKEdge

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VTKEdge is no longer under active development, as its functionality has been incorporated into the Visualization Toolkit (VTK). The VTKEdge project created a library of advanced visualization and data processing techniques that complemented VTK. The custom modules to enable the use of these techniques within ParaView have also been incorporated into VTK.

VistA-Edge Practice Management System

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This is an Open Source Practice Management System (PMS) integrated with VistA, the electronic health record and health information system originally developed by the U.S. Department of Veterans Affairs (VA).

GT.M

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GT.M is a FOSS (AGPL v3) implementation of M (also known as MUMPS), a combination of a procedural programming language well integrated with a hierarchical key-value database engine. M is widely used in enterprise scale healthcare applications and application suites, such as the VistA implementations. GT.M scales up to very large databases (the largest production sites have aggregate databases to several TB) and thousands of concurrent users.

vxVista

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vxVistA is FOIA VistA that has been modified and enhanced by DSS, Inc. to work in non-VA health care delivery settings. Modifications include removing references to “veterans” and allowing the use of medical record numbers rather than the social security number which the VA uses for patient identification.

Enhancements include:

  • Streamlined menu options for many core functions
  • Prescription Writing and printing
  • Laboratory Order Print with BarCode
  • Pediatric Problem List changes
  • OB/GYN Problem List changes

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