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Image Processing

MITO - Medical Imaging TOolkit

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The "MITO - Medical Imaging TOolkit" project coagulates a number of activities aimed at defining and implementing an open-source, cross-platform software architecture for advanced Medical Imaging. MITO toolkit makes it possible to fetch radiological information and images stored in a PACS according to the standard format DICOM, then provides the final user with basic functionalities such as 2D-3D visualization (VR, SR, MIP), image segmentation and fusion, ROI. Moreover, MITO provides interaction techniques for manipulating 3D medical data in a virtual environment by 2 DOF input devices.

pydicom

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pydicom is a pure python package for working with DICOM files. It was made for inspecting and modifying DICOM data in an easy "pythonic" way. The modifications can be written again to a new file. As a pure python package, it should run anywhere python runs without any other requirements.

pydicom is not a DICOM server, and is not primarily about viewing images. It is designed to let you manipulate data elements in DICOM files with python code.

Ruby DICOM

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UBY DICOM is a cross-platform library for handling DICOM files and network communication in the Ruby language. DICOM is a standard that is widely used throughout the world for saving and transmitting image data used in medicine. The library supports reading, editing and writing files as well as querying, retrieving and sending files.

FrameWork for Software Production Line (FW4SPL)

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FW4SPL is a component-oriented architecture with the notion of role-based programming. FW4SPL consists of a set of cross-platform C++ libraries. For now, FW4SPL focuses on the problem of medical images processing and visualization.

MediPy

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MediPy is a cross-platform software (Windows, Linux, Mac OS), dedicated to the visualization and processing aspects of medical imaging. It is targeted at both physicians and researchers, being both user-friendly and easy to extend. Physicians will benefit from the pre-programmed tasks (e.g. segmentation, registration, detection of lesions) and the possibility to record new tasks, tailoring the software to each user. The use of standard file formats (Analyze/Nifti, Dicom) allows to load image from many sources, as well as integrate to a PACS.

Mayam

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A Cross-platform DICOM viewer developed in Java using the dcm4che toolkit. Mayam is still work under progress. The current features are:

  • DICOM Listener for Q/R
  • DICOM Send
  • Local DB for storing study information
  • Importing DICOM studies from local disk
  • Parsing DicomDir from local disk or CD
  • Query compressed studies without decompressing them
  • Multiple Studies viewer using Layout,Tab view

MIView

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MIView is an OpenGL based medical image viewer that contains useful tools such as a DICOM anonymizer and format conversion utility. MIView can read DICOM, Analyze/Nifti, and raster images, and can write Analyze/Nifti and raster images. It can also read and convert DICOM mosaic images. The main goal of MIView is to provide a platform to load any type of medical image and be able to view and manipulate the image. Volume rendering is the main type of advanced visualization that I'm trying to implement.

GIMIAS

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GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.

GIMIAS suites are collections of prototypes that build a complete platform for one or more clinical applications.

Ginkgo CADx

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Ginkgo CADx project started in 2009 with the aim to create an interactive, universal, homogeneous, open-source and cross-platform CADX environment.

Ginkgo is built over a huge amount of advanced technologies providing full abstraction of complex tasks as:

JULIDE

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JULIDE is a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections.

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