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Data Analysis

LIMS for proteomics (LIPAGE)

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LIPAGE is an open source laboratory information management system for 2DPAGE-based proteomics.

HL7 Inspector

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The HL7 Inspector is a useful hl7 tool for integration the HL7 in a health care environmental. It will help you to minimize the time for tuning the HL7 communication between systems such as HIS and RIS by analyzing and validating HL7 messages.

MRmap

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MRmap is a flexible software tool that enables T1, T2, and T2* mapping from source images of multiple types of pulse sequences (IR-prepared multi-image T1 mapping, Look-Locker/ TOMROP T1 mapping, MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).

MRmap is a pure research tool and is not intended for any diagnostic or clinical use.

Nukak3D

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3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting, DICOM support.

Gwyddion

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Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.

It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.

OpenEEG

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The OpenEEG project is about creating a low cost EEG device. Working hardware has been built and is in a late beta stage. Software is still only alpha.

Many people are interested in what is called neurofeedback or EEG biofeedback training, a generic mental training method which makes the trainee consciously aware of the general activity in the brain. This method shows great potential for improving many mental capabilities and exploring consciousness. Other people want to do experiments with brain-computer interfaces or just want to have a look at their brain at work.

FSL

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FMRIB Software Library (FSL) is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

Lipsia

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Leipzig Image Processing and Statistical Inference Algorithms (Lipsia) is a software tool for processing functional magnetic resonance imaging (fMRI) data. It was developed over the course of several years at the Max-Planck-Institute for Human Cognitive and Brain Sciences in Leipzig, Germany.

ImageJ

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ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.4 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux.

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