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STIR

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STIR is Open Source software for use in tomographic imaging. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations in tomographic imaging. Currently, the emphasis is on (iterative) image reconstruction in PET, but other application areas and imaging modalities can and might be added.

STIR is the successor of the PARAPET software library which was the result of a (European Union funded) collaboration between 6 different partners (see Credits).

Homepage: 
http://stir.sourceforge.net/

Grassroots DICOM (GDCM)

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Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly. GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database.

Homepage: 
http://gdcm.sourceforge.net

Gwyddion

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Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and image analysis, for instance for analysis of profilometry data.

It aims to provide multiplatform modular program for 2D data analysis that could be easily extended by modules and plug-ins.

Homepage: 
http://gwyddion.net/

Niftilib

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Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

Niftilib currently has C, Java, MATLAB, and Python libraries; we plan to add some MATLAB/mex interfaces to the C library in the not too distant future.

Homepage: 
http://niftilib.sourceforge.net/

XMedCon

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Your rating: None Average: 1.9 (7 votes)

The project stands for Medical Image Conversion. Released under the (L)GPL licence, it comes with the full C-source code of the library, a flexible command-line utility and a neat graphical front-end using the Gtk+ toolkit. The supported formats are: Acr/Nema 2.0, Analyze (SPM), Concorde/µPET, DICOM 3.0, CTI ECAT 6/7, NIfTI-1, InterFile3.3 and PNG or Gif87a/89a.

Homepage: 
http://xmedcon.sourceforge.net/

The 'medAdherence' R Package

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Your rating: None Average: 2 (2 votes)

Adherence is defined as "the extent to which a person’s behavior coincides with medical or health
advice", which is very important, for both clinical researchers and physicians, to identify the treatment
effect of a specific medication(s).

Homepage: 
http://cran.r-project.org/web/packages/medAdherence/

CDMEDIC PACS WEB

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Your rating: None Average: 3.8 (16 votes)

Full featured free PACS based on ctn or dcm4chee, dcmtk and mysql, with remote accessiom using apache and perl available for Linux in Debian packaging format for i386, amd64 and Mac OS darwin i386 and ppc.

Homepage: 
http://cdmedicpacsweb.sourceforge.net/

Insight Segmentation and Registration Toolkit (ITK)

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Your rating: None Average: 3.2 (5 votes)

ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both.

Homepage: 
http://www.itk.org/

OpenIGTLink

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Your rating: None Average: 4 (4 votes)

The goal of OpenIGTLink is to provide a standardized mechanism to connect software/hardware through the network for image-guided therapy (IGT) applications. The features of OpenIGTLink include:

Homepage: 
http://www.na-mic.org/Wiki/index.php/OpenIGTLink

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