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A
A. Abdirad, Sarrafpour, B., and Ghaderi-Sohi, S., “Static telepathology in cancer institute of Tehran university: report of the first academic experience in Iran.”, Diagn Pathol, vol. 1, p. 33, 2006.
A. Adewumi, Misra, S., Omoregbe, N., Crawford, B., and Soto, R., “A systematic literature review of open source software quality assessment models”, SpringerPlus, vol. 5, p. 1936, 2016.
J. Allard, Cotin, S., Faure, F., Bensoussan, P. - J., Poyer, F., Duriez, C., Delingette, H., and Grisoni, L., “SOFA - an Open Source Framework for Medical Simulation”, in Medicine Meets Virtual Reality (MMVR'15), Long Beach, USA, 2007.
M. Alsaffar, Yellowlees, P., Odor, A., and Hogarth, M., “The State of Open Source Electronic Health Record Projects: A Software Anthropology Study.”, JMIR Med Inform, vol. 5, no. 1, p. e6, 2017.
B
S. Berisha, Chang, S., Saki, S., Daeinejad, D., He, Z., Mankar, R., and Mayerich, D., “{SIproc}: an open-source biomedical data processing platform for large hyperspectral images”, The Analyst, 2016.
C
C. G. Chute, Pathak, J., Savova, G. K., Bailey, K. R., Schor, M. I., Hart, L. A., Beebe, C. E., and Huff, S. M., “The {SHARPn} project on secondary use of {Electronic} {Medical} {Record} data: progress, plans, and possibilities”, AMIA .. Annual Symposium proceedings. AMIA Symposium, vol. 2011, pp. 248–256, 2011.
J. Conn, “Staying open. Open-source health IT gets boost from foundation.”, Modern healthcare, vol. 41, pp. 10–11, 2011.
C. M. Costa, Gondim, D. D., Gondim, D. D., Soares, H. B., Ribeiro, A. G. C. D., Silva, I., Winkler, E., Celi, L., Guerreiro, A. M. G., and Leite, C. R. M., “S2DIA: a diagnostic system for Diabetes mellitus using SANA platform.”, Conf Proc IEEE Eng Med Biol Soc, vol. 2012, pp. 6078-81, 2012.
J. C. Crane, Olson, M. P., and Nelson, S. J., “SIVIC: Open-source, standards-based software for DICOM MR spectroscopy workflows”, International Journal of Biomedical Imaging, vol. 2013, 2013.
D
J. V. Douglas, Bianco, S., Edlund, S., Engelhardt, T., Filter, M., Günther, T., Hu, K. Maggie, Nixon, E. J., Sevilla, N. L., Swaid, A., and Kaufman, J. H., “STEM: An Open Source Tool for Disease Modeling.”, Health Secur, vol. 17, no. 4, pp. 291-306, 2019.
F
F. Faure, Duriez, C., Delingette, H., Allard, J., Gilles, B., Marchesseau, S., Talbot, H., Courtecuisse, H., Bousquet, G., Peterlik, I., and Cotin, S., “SOFA: A Multi-Model Framework for Interactive Physical Simulation”, in Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, vol. 11, Y. Payan, Ed. Springer Berlin Heidelberg, 2012, pp. 283-321.
G
A. Gainer, Roth, M., Strong, P., and Davis, J., “A Standards-Based Open Source Application to Gather Health Assessment Data in Developing Countries”, in Global Humanitarian Technology Conference (GHTC), 2012 IEEE, 2012.
D. C. Gimbel, Sohani, A. R., Busarla, S. Vara Prasa, Kirimi, J. Muthoni, Sayed, S., Okiro, P., and Nazarian, R. M., “A static-image telepathology system for dermatopathology consultation in East Africa: the Massachusetts General Hospital Experience.”, J Am Acad Dermatol, vol. 67, no. 5, pp. 997-1007, 2012.
T. Good and DiTommaso, M., “SQL Clinic: the open-source alternative for electronic medical records.”, Psychiatr Serv, vol. 56, no. 3, pp. 269-71, 2005.
H
D. Haak, Samsel, C., Gehlen, J., Jonas, S., and Deserno, T. M., “Simplifying electronic data capture in clinical trials: workflow embedded image and biosignal file integration and analysis via web services.”, J Digit Imaging, vol. 27, no. 5, pp. 571-80, 2014.
T. J. Hannan, “Solving a Health Information Management Problem. An international success story.”, World Hosp Health Serv, vol. 51, no. 2, pp. 32-5, 2015.
H. Hara, Hori, T., Sugahara, K., and Yamashita, H., “Surgical planning of Isshiki type I thyroplasty using an open-source Digital Imaging and Communication in Medicine viewer OsiriX.”, Acta Otolaryngol, vol. 134, no. 6, pp. 620-5, 2014.
M. C. Hiner, Rueden, C. T., and Eliceiri, K. W., “{SCIFIO}: an extensible framework to support scientific image formats”, BMC bioinformatics, vol. 17, p. 521, 2016.
M. T. Hirschmann, Wagner, C. R., Rasch, H., and Henckel, J., “Standardized volumetric 3D-analysis of SPECT/CT imaging in orthopaedics: overcoming the limitations of qualitative 2D analysis.”, BMC Med Imaging, vol. 12, no. 1, p. 5, 2012.
M. A. Hogarth and Turner, S., “A study of clinically related open source software projects.”, AMIA Annu Symp Proc, pp. 330-4, 2005.
J
B. Janamanchi, Katsamakas, E., Raghupathi, W., and Gao, W., “The state and profile of open source software projects in health and medical informatics.”, International journal of medical informatics, vol. 78, no. 7, pp. 457-72, 2009.
K
V. Micheal Kiberu, Matovu, J. K. B., Makumbi, F., Kyozira, C., Mukooyo, E., and Wanyenze, R. K., “Strengthening district-based health reporting through the district health management information software system: the Ugandan experience.”, BMC Med Inform Decis Mak, vol. 14, p. 40, 2014.
L
H. Leroux, McBride, S., and Gibson, S., “On selecting a clinical trial management system for large scale, multi-centre, multi-modal clinical research study.”, Stud Health Technol Inform, vol. 168, pp. 89-95, 2011.
Y. Liu, Hu, J., Snell-Feikema, I., VanBemmel, M. S., Lamsal, A., and Wimberly, M. C., “Software to Facilitate Remote Sensing Data Access for Disease Early Warning Systems.”, Environ Model Softw, vol. 74, pp. 247-257, 2015.
M
K. D. Mandl, Mandel, J. C., Murphy, S. N., Bernstam, E. V., Ramoni, R. L., Kreda, D. A., McCoy, M. J., Adida, B., and Kohane, I. S., “The SMART Platform: early experience enabling substitutable applications for electronic health records.”, J Am Med Inform Assoc, 2012.

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