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2021
L. Fortunato and Galassi, M., “The case for free and open source software in research and scholarship.”, Philos Trans A Math Phys Eng Sci, vol. 379, no. 2197, p. 20200079, 2021.
M. Vazquez, Anfossi, L., Ben-Yoav, H., Diéguez, L., Karopka, T., Ventura, B. Della, Abalde-Cela, S., Minopoli, A., Di Nardo, F., Shukla, V. Kumar, Teixeira, A., Tvarijonaviciute, A., and Franco, L., “Use of cost-effective technologies for a routine clinical pathology laboratory”, Lab on a Chip, p. - , 2021.
S. Kobayashi, Falcón, L., Fraser, H., Braa, J., Amarakoon, P., Marcelo, A., and Paton, C., “Using Open Source, Open Data, and Civic Technology to Address the COVID-19 Pandemic and Infodemic.”, Yearb Med Inform, 2021.
S. Kobayashi, Falcón, L., Fraser, H., Braa, J., Amarakoon, P., Marcelo, A., and Paton, C., “Using Open Source, Open Data, and Civic Technology to Address the COVID-19 Pandemic and Infodemic.”, Yearb Med Inform, 2021.
2019
J. Lin, Ranslam, K., Shi, F., Figurski, M., and Liu, Z., “Data Migration from Operating EMRs to OpenEMR with Mirth Connect.”, Stud Health Technol Inform, vol. 257, pp. 288-292, 2019.
P. Kubáň, Foret, F., and Erny, G., “Open source capillary electrophoresis.”, Electrophoresis, vol. 40, no. 1, pp. 65-78, 2019.
V. - M. Isoviita, Salminen, L., Azar, J., Lehtonen, R., Roering, P., Carpén, O., Hietanen, S., Grénman, S., Hynninen, J., Färkkilä, A., and Hautaniemi, S., “Open Source Infrastructure for Health Care Data Integration and Machine Learning Analyses.”, JCO Clin Cancer Inform, vol. 3, pp. 1-16, 2019.
B. S. Glicksberg, Oskotsky, B., Thangaraj, P. M., Giangreco, N., Badgeley, M. A., Johnson, K. W., Datta, D., Rudrapatna, V., Rappoport, N., Shervey, M. M., Miotto, R., Goldstein, T. C., Rutenberg, E., Frazier, R., Lee, N., Israni, S., Larsen, R., Percha, B., Li, L., Dudley, J. T., Tatonetti, N. P., and Butte, A. J., “PatientExploreR: an extensible application for dynamic visualization of patient clinical history from Electronic Health Records in the OMOP Common Data Model Title.”, Bioinformatics, 2019.
A. Alas Bhattacharya, Umar, N., Audu, A., Felix, H., Allen, E., Schellenberg, J. R. M., and Marchant, T., “Quality of routine facility data for monitoring priority maternal and newborn indicators in DHIS2: A case study from Gombe State, Nigeria.”, PLoS One, vol. 14, no. 1, p. e0211265, 2019.
Y. Ranjan, Rashid, Z., Stewart, C., Conde, P., Begale, M., Verbeeck, D., Boettcher, S., Dobson, R., and Folarin, A., “RADAR-Base: Open Source Mobile Health Platform for Collecting, Monitoring, and Analyzing Data Using Sensors, Wearables, and Mobile Devices.”, JMIR Mhealth Uhealth, vol. 7, no. 8, p. e11734, 2019.
J. V. Douglas, Bianco, S., Edlund, S., Engelhardt, T., Filter, M., Günther, T., Hu, K. Maggie, Nixon, E. J., Sevilla, N. L., Swaid, A., and Kaufman, J. H., “STEM: An Open Source Tool for Disease Modeling.”, Health Secur, vol. 17, no. 4, pp. 291-306, 2019.
2018
C. Maier, Lang, L., Storf, H., Vormstein, P., Bieber, R., Bernarding, J., Herrmann, T., Haverkamp, C., Horki, P., Laufer, J., Berger, F., Höning, G., Fritsch, H. W., Schüttler, J., Ganslandt, T., Prokosch, H. U., and Sedlmayr, M., “Towards Implementation of OMOP in a German University Hospital Consortium.”, Appl Clin Inform, vol. 9, no. 1, pp. 54-61, 2018.
2017
S. Oza, Jazayeri, D., Teich, J. M., Ball, E., Nankubuge, P. Alexandra, Rwebembera, J., Wing, K., Sesay, A. Amara, Kanter, A. S., Ramos, G. D., Walton, D., Cummings, R., Checchi, F., and Fraser, H. S., “Development and Deployment of the OpenMRS-Ebola Electronic Health Record System for an Ebola Treatment Center in Sierra Leone.”, J Med Internet Res, vol. 19, no. 8, p. e294, 2017.
H. Kondylakis, Koumakis, L., Hänold, S., Nwankwo, I., Forgó, N., Marias, K., Tsiknakis, M., and Graf, N., “Donor's support tool: {Enabling} informed secondary use of patient's biomaterial and personal data”, International Journal of Medical Informatics, vol. 97, pp. 282–292, 2017.
L. C. Rosencrans, Sume, G. E., Kouontchou, J. - C., Voorman, A., Anokwa, Y., Fezeu, M., and Seaman, V. Y., “Mapping for Health in Cameroon: Polio Legacy and Beyond.”, J Infect Dis, vol. 216, no. suppl_1, pp. S337-S342, 2017.
P. Bankhead, Loughrey, M. B., Fernández, J. A., Dombrowski, Y., McArt, D. G., Dunne, P. D., McQuaid, S., Gray, R. T., Murray, L. J., Coleman, H. G., James, J. A., Salto-Tellez, M., and Hamilton, P. W., “QuPath: Open source software for digital pathology image analysis.”, Sci Rep, vol. 7, no. 1, p. 16878, 2017.
2016
B. Fitts, Zhang, Z., Maher, M., and Demchak, B., “dot-app: a {Graphviz}-{Cytoscape} conversion plug-in”, F1000Research, vol. 5, p. 2543, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
T. Kapur, Pieper, S., Fedorov, A., Fillion-Robin, J. - C., Halle, M., O'Donnell, L., Lasso, A., Ungi, T., Pinter, C., Finet, J., Pujol, S., Jagadeesan, J., Tokuda, J., Norton, I., Estepar, R. San Jose, Gering, D., Aerts, H. J. W. L., Jakab, M., Hata, N., Ibanez, L., Blezek, D., Miller, J., Aylward, S., W Grimson, E. L., Fichtinger, G., Wells, W. M., Lorensen, W. E., Schroeder, W., and Kikinis, R., “Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience.”, Med Image Anal, 2016.
A. E. Williamson, Ylioja, P. M., Robertson, M. N., Antonova-Koch, Y., Avery, V., Baell, J. B., Batchu, H., Batra, S., Burrows, J. N., Bhattacharyya, S., Calderon, F., Charman, S. A., Clark, J., Crespo, B., Dean, M., Debbert, S. L., Delves, M., Dennis, A. S. M., Deroose, F., Duffy, S., Fletcher, S., Giaever, G., Hallyburton, I., Gamo, F. - J., Gebbia, M., R. Guy, K., Hungerford, Z., Kirk, K., Lafuente-Monasterio, M. J., Lee, A., Meister, S., Nislow, C., Overington, J. P., Papadatos, G., Patiny, L., Pham, J., Ralph, S. A., Ruecker, A., Ryan, E., Southan, C., Srivastava, K., Swain, C., Tarnowski, M. J., Thomson, P., Turner, P., Wallace, I. M., Wells, T. N. C., White, K., White, L., Willis, P., Winzeler, E. A., Wittlin, S., and Todd, M. H., “Open {Source} {Drug} {Discovery}: {Highly} {Potent} {Antimalarial} {Compounds} {Derived} from the {Tres} {Cantos} {Arylpyrroles}”, ACS central science, vol. 2, pp. 687–701, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.
W. C. Van Voorhis, Adams, J. H., Adelfio, R., Ahyong, V., Akabas, M. H., Alano, P., Alday, A., Resto, Y. Alemán, Alsibaee, A., Alzualde, A., Andrews, K. T., Avery, S. V., Avery, V. M., Ayong, L., Baker, M., Baker, S., Ben Mamoun, C., Bhatia, S., Bickle, Q., Bounaadja, L., Bowling, T., Bosch, J., Boucher, L. E., Boyom, F. F., Brea, J., Brennan, M., Burton, A., Caffrey, C. R., Camarda, G., Carrasquilla, M., Carter, D., Cassera, M. Belen, Cheng, K. Chih- Chien, Chindaudomsate, W., Chubb, A., Colon, B. L., Colón-López, D. D., Corbett, Y., Crowther, G. J., Cowan, N., D'Alessandro, S., Le Dang, N., Delves, M., DeRisi, J. L., Du, A. Y., Duffy, S., El-Sayed, S. Abd El- Sal, Ferdig, M. T., Robledo, J. A. Fernánd, Fidock, D. A., Florent, I., Fokou, P. V. T., Galstian, A., Gamo, F. Javier, Gokool, S., Gold, B., Golub, T., Goldgof, G. M., Guha, R., W Guiguemde, A., Gural, N., R Guy, K., Hansen, M. A. E., Hanson, K. K., Hemphill, A., van Huijsduijnen, R. Hooft, Horii, T., Horrocks, P., Hughes, T. B., Huston, C., Igarashi, I., Ingram-Sieber, K., Itoe, M. A., Jadhav, A., Jensen, A. Naranuntar, Jensen, L. T., H Y Jiang, R., Kaiser, A., Keiser, J., Ketas, T., Kicka, S., Kim, S., Kirk, K., Kumar, V. P., Kyle, D. E., Lafuente, M. Jose, Landfear, S., Lee, N., Lee, S., Lehane, A. M., Li, F., Little, D., Liu, L., Llinás, M., Loza, M. I., Lubar, A., Lucantoni, L., Lucet, I., Maes, L., Mancama, D., Mansour, N. R., March, S., McGowan, S., Vera, I. Medina, Meister, S., Mercer, L., Mestres, J., Mfopa, A. N., Misra, R. N., Moon, S., Moore, J. P., da Costa, F. Morais Rod, Müller, J., Muriana, A., Hewitt, S. Nakazawa, Nare, B., Nathan, C., Narraidoo, N., Nawaratna, S., Ojo, K. K., Ortiz, D., Panic, G., Papadatos, G., Parapini, S., Patra, K., Pham, N., Prats, S., Plouffe, D. M., Poulsen, S. - A., Pradhan, A., Quevedo, C., Quinn, R. J., Rice, C. A., Rizk, M. Abdo, Ruecker, A., St Onge, R., Ferreira, R. Salgado, Samra, J., Robinett, N. G., Schlecht, U., Schmitt, M., Villela, F. Silva, Silvestrini, F., Sinden, R., Smith, D. A., Soldati, T., Spitzmüller, A., Stamm, S. Maximilian, Sullivan, D. J., Sullivan, W., Suresh, S., Suzuki, B. M., Suzuki, Y., S Swamidass, J., Taramelli, D., R Y Tchokouaha, L., Theron, A., Thomas, D., Tonissen, K. F., Townson, S., Tripathi, A. K., Trofimov, V., Udenze, K. O., Ullah, I., Vallieres, C., Vigil, E., Vinetz, J. M., Vinh, P. Voong, Vu, H., Watanabe, N. - A., Weatherby, K., White, P. M., Wilks, A. F., Winzeler, E. A., Wojcik, E., Wree, M., Wu, W., Yokoyama, N., Zollo, P. H. A., Abla, N., Blasco, B., Burrows, J., Laleu, B., Leroy, D., Spangenberg, T., Wells, T., and Willis, P. A., “Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.”, PLoS Pathog, vol. 12, no. 7, p. e1005763, 2016.

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