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OMERO

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OMERO is client-server software for visualisation, management and analysis of biological microscope images.

From the microscope to publication, OMERO handles all your images in a secure central repository. You can view, organise, analyse and share your data from anywhere you have internet access. Work with your images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software.

rxncon

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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

PyEEG

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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

OnkoDICOM

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OnkoDICOM was created with Radiation Oncologists to allow Radiation Oncologists to do research on DICOM standard image sets (DICOM-RT, CT, MRI, PET) using open source technologies, such as pydicom, dicompyler-core, PySide6, PIL, and matplotlib. OnkoDICOM is cross platform, open source software, and welcomes contributions from the wider community via GitHub .