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rxncon

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Your rating: None Average: 5 (2 votes)

The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features:

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.
Homepage: 
http://www.rxncon.org/

Simulation Open Framework Architecture (SOFA)

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Your rating: None Average: 4.2 (6 votes)

SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool.

Homepage: 
http://www.sofa-framework.org/

HL7v3 Test Harness

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Your rating: None Average: 2.3 (4 votes)

"The HL7 Test Harness system is an HL7 v3 message conformance testing application that also provides the ability to simulate the message processing actions of a client and/or server system. The app provides message workflow, format and content testing."

Homepage: 
http://sourceforge.net/projects/hl7-testharness/

ODIN

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"ODIN is a C++ software framework to develop, simulate and run magnetic resonance sequences on different platforms."

Homepage: 
http://od1n.sourceforge.net/

CTSim

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Your rating: None Average: 2.3 (7 votes)

CTSim simulates the process of transmitting X-rays through phantom objects. These X-ray data are called projections. CTSim reconstructs the original phantom image from the projections using a variety of algorithms. Additionally, CTSim has a wide array of image analysis and image processing functions.

Homepage: 
http://www.ctsim.org/

IHE open source

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Your rating: None Average: 2.5 (8 votes)

This project holds an implementation of the Cross-Enterprise Document Sharing (XDS) profile as defined by IHE (ihe.net). It includes implementations of both the Document Registry and Document Repository actors.

The project is deployed at the XDS Public Registry Test Facility of the National Institute of Standards and Technology (NIST).

Homepage: 
http://sourceforge.net/projects/iheos/

GIMIAS

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Your rating: None Average: 2.4 (9 votes)

GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.

GIMIAS suites are collections of prototypes that build a complete platform for one or more clinical applications.

Homepage: 
http://www.gimias.org/

HIEOS

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Your rating: None Average: 2 (2 votes)

HIEOS is an open source implementation of Integrating the Healthcare Enterprise (IHE) Cross Enterprise Document Sharing (XDS.b) and Cross Community Access (XCA) integration profiles.

Homepage: 
https://sourceforge.net/projects/hieos/

ParaView

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Your rating: None Average: 4 (1 vote)

ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaView's batch processing capabilities.

ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.

Homepage: 
http://www.paraview.org/

Visualization Toolkit (VTK)

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Your rating: None Average: 2.3 (6 votes)

The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing, and visualization. It consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including scalar, vector, tensor, texture, and volumetric methods, as well as advanced modeling techniques such as implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

Homepage: 
http://www.vtk.org/

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