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Book Chapter
A. Bessani, Brandt, J., Bux, M., Cogo, V., Dimitrova, L., Dowling, J., Gholami, A., Hakimzadeh, K., Hummel, M., Ismail, M., Laure, E., Leser, U., Litton, J. - E., Martinez, R., Niazi, S., Reichel, J., and Zimmermann, K., “BiobankCloud: A Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets”, in Biomedical Data Management and Graph Online Querying: VLDB 2015 Workshops, Big-O(Q) and DMAH, Waikoloa, HI, USA, August 31 – September 4, 2015, Revised Selected Papers, F. Wang, Luo, G., Weng, C., Khan, A., Mitra, P., and Yu, C., Eds. Cham: Springer International Publishing, 2016, pp. 89–105.
A. Bessani, Brandt, J., Bux, M., Cogo, V., Dimitrova, L., Dowling, J., Gholami, A., Hakimzadeh, K., Hummel, M., Ismail, M., Laure, E., Leser, U., Litton, J. - E., Martinez, R., Niazi, S., Reichel, J., and Zimmermann, K., “BiobankCloud: A Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets”, in Biomedical Data Management and Graph Online Querying: VLDB 2015 Workshops, Big-O(Q) and DMAH, Waikoloa, HI, USA, August 31 – September 4, 2015, Revised Selected Papers, F. Wang, Luo, G., Weng, C., Khan, A., Mitra, P., and Yu, C., Eds. Cham: Springer International Publishing, 2016, pp. 89–105.
A. Séror, “Designing Sustainable Open Source Systems: The Cuban National Health Care Network and Portal (INFOMED)”, in Grand Successes and Failures in IT. Public and Private Sectors, vol. 402, Y. K. Dwivedi, Henriksen, H. Z., Wastell, D., and De’, R., Eds. Springer Berlin Heidelberg, 2013, pp. 451-466.
L. Cavalini and Cook, T., “Health Informatics: The Relevance of Open Source and Multilevel Modeling”, in Open Source Systems: Grounding Research, vol. 365, S. Hissam, Russo, B., de Mendonça Neto, M., and Kon, F., Eds. Springer Boston, 2011, pp. 338-347.
K. Henttonen, “Libre Software as an Innovation Enabler in India Experiences of a Bangalorian Software SME”, in Open Source Systems: Grounding Research, vol. 365, S. Hissam, Russo, B., de Mendonça Neto, M., and Kon, F., Eds. Springer Boston, 2011, pp. 220-232.
K. Henttonen, “Libre Software as an Innovation Enabler in India Experiences of a Bangalorian Software SME”, in Open Source Systems: Grounding Research, vol. 365, S. Hissam, Russo, B., de Mendonça Neto, M., and Kon, F., Eds. Springer Boston, 2011, pp. 220-232.
A. M. Franz, März, K., Seitel, A., Müller, M., Zelzer, S., Nodeln, M., Meinzer, H. - P., and Maier-Hein, L., “MITK-US: Echtzeitverarbeitung von Ultraschallbildern in MITK”, in Bildverarbeitung für die Medizin 2013, H. - P. Meinzer, Deserno, T. Martin, Handels, H., and Tolxdorff, T., Eds. Springer Berlin Heidelberg, 2013, pp. 302-307.
Conference Paper
E. Helms and Williams, L., “Evaluating access control of open source electronic health record systems”, in Proceeding of the 3rd workshop on Software engineering in health care, New York, NY, USA, 2011, pp. 63–70.
J. Vejvalka, Lesný, P., Holeček, T., Slabý, K., Jarolímková, A., and Bouzková, H., “MediGrid – Facilitating Semantic-Based processing of Biomedical Data and Knowledge”, in Proceedings of the 1st International Workshop on Open Source in European Health Care: The Time is Ripe (BIOSTEC 2009), 2009.
P. F. Neher, Stieltjes, B., Reisert, M., Reicht, I., Meinzer, H. - P., and Fritzsche, K. H., “MITK global tractography”, in Medical Imaging 2012: Image Processing, 2012.
H. B. Christensen and Hansen, K. M., “Net4Care: Towards a Mission-Critical Software Ecosystem”, in Software Architecture (WICSA) and European Conference on Software Architecture (ECSA), 2012 Joint Working IEEE/IFIP Conference on, 2012.
C. - Y. Lien, Onken, M., Eichelberg, M., Kao, T., and Hein, A., “Open source tools for standardized privacy protection of medical images”, in Medical Imaging 2011: Advanced PACS-based Imaging Informatics and Therapeutic Applications, 2011, vol. 7967, p. 79670M.
A. Cedilnik, Geveci, B., Moreland, K., Ahrens, J. P., and Favre, J. M., “Remote Large Data Visualization in the ParaView Framework.”, in EGPGV, 2006.
P. Lesný, Krásničanová, H., Holeček, T., Slabý, K., and Vejvalka, J., “Repositories of Reusable Auxological (Growth) Algorithms for eHealth”, in Proceedings of the 1st International Workshop on Open Source in European Health Care: The Time is Ripe (BIOSTEC 2009), 2009.
Journal Article
B. E. Jackson, Evangelista, D. J., Ray, D. D., and Hedrick, T. L., “3D for the people: multi-camera motion capture in the field with consumer-grade cameras and open source software.”, Biol Open, 2016.
G. van Valkenhoef, Tervonen, T., Zwinkels, T., de Brock, B., and Hillege, H., “ADDIS: a decision support system for evidence-based medicine”, Decision Support Systems, vol. in press, 2012.
J. W. Dietrich, Stachon, A., Antic, B., Klein, H. H., and Hering, S., “The AQUA-FONTIS study: protocol of a multidisciplinary, cross-sectional and prospective longitudinal study for developing standardized diagnostics and classification of non-thyroidal illness syndrome.”, BMC Endocr Disord, vol. 8, p. 13, 2008.
M. Klompas, Haney, G., Church, D., Lazarus, R., Hou, X., and Platt, R., “Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance.”, PloS one, vol. 3, no. 7, p. e2626, 2008.
M. Klompas, Haney, G., Church, D., Lazarus, R., Hou, X., and Platt, R., “Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance.”, PloS one, vol. 3, no. 7, p. e2626, 2008.
B. Haarbrandt, Tute, E., and Marschollek, M., “Automated population of an i2b2 clinical data warehouse from an {openEHR}-based data repository”, Journal of Biomedical Informatics, vol. 63, pp. 277–294, 2016.
P. Kankaanpää, Paavolainen, L., Tiitta, S., Karjalainen, M., Päivärinne, J., Nieminen, J., Marjomäki, V., Heino, J., and White, D. J., “BioImageXD: an open, general-purpose and high-throughput image-processing platform.”, Nat Methods, vol. 9, no. 7, pp. 683-9, 2012.
S. Rea, Pathak, J., Savova, G., Oniki, T. A., Westberg, L., Beebe, C. E., Tao, C., Parker, C. G., Haug, P. J., Huff, S. M., and Chute, C. G., “Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project.”, J Biomed Inform, 2012.
S. Rea, Pathak, J., Savova, G., Oniki, T. A., Westberg, L., Beebe, C. E., Tao, C., Parker, C. G., Haug, P. J., Huff, S. M., and Chute, C. G., “Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project.”, J Biomed Inform, 2012.
J. J. Cimino, Hayamizu, T. F., Bodenreider, O., Davis, B., Stafford, G. A., and Ringwald, M., “The caBIG terminology review process.”, J Biomed Inform, vol. 42, no. 3, pp. 571-80, 2009.
L. Becnel Boyd, Hunicke-Smith, S. P., Stafford, G. A., Freund, E. T., Ehlman, M., Chandran, U., Dennis, R., Fernandez, A. T., Goldstein, S., Steffen, D., Tycko, B., and Klemm, J. D., “The caBIG® Life Science Business Architecture Model.”, Bioinformatics, vol. 27, no. 10, pp. 1429-35, 2011.

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